2014 Fall Publications from the Department of Ecology and Evolution

• Stanton J.C., K.T. Shoemaker, R.G. Pearson, H.R. Akçakaya. 2014. Warning times for species extinctions due to climate change. Global Change Biology (in press) DOI:10.1111/gcb.12721
• Shoemaker, K.T. and H.R. Akçakaya. 2014. Inferring the nature of anthropogenic threats from long-term abundance records. Conservation Biology (in press) 10.1111/cobi.12353
• Fordham, D.A., K.T. Shoemaker, N.H. Schumaker, H.R. Akçakaya, N. Clisby, and B.W. Brook. 2014. How interactions between animal movement and landscape processes modify local range dynamics and extinction risk. Biology Letters 10,20140198
• Bonebrake, T.C., A.D. Syphard, J. Franklin, K. E. Anderson, H. R. Akçakaya, T. Mizerek, C. Winchell, H. M. Regan. 2014. Fire management, managed relocation, and land conservation options for long-lived obligate seeding plants under global changes in climate, urbanization, and fire regime. Conservation Biology 28:1057-67
• Cahill, A.E., and F. Viard. 2014. Genetic structure in native and non-native populations of the direct-developing gastropod Crepidula convexa. Marine Biology, 161: 2433-2443
• Davies, K.T.J., G. Tsagkogeorga, N.C. Bennett, L.M. Dávalos, C.G. Faulkes, S.J. Rossiter. 2014. Molecular evolution of growth hormone and insulin-like growth factor 1 receptors in long-lived, small-bodied mammals. Gene 549(2):228-236
• Dávalos, L.M., and A.L. Russell. 2014. Sex-biased dispersal produces high error rates in mitochondrial distance-based and tree-based species delimitation. Journal of Mammalogy 95(4):781-791
• Ben G. Weinstein, Boris Tinoco, Juan Luis Parra, Leone M Brown, Jimmy A. McGuire, F. Gary Stiles, Catherine H. Graham. 2014. Taxonomic, phylogenetic, and trait beta diversity in South American hummingbirds. The American Naturalist 184(2):211-224
• Allen, B.J., and J.S. Levinton. 2014. Sexual selection and the physiological consequences of habitat choice by a fiddler crab. Oecologia 176:25-34. DOI 10.1007/s00442-014-3002-y
• LaRue, M., G. Kooyman, H.J. Lynch, and P. Fretwell. 2014. Emigration in emperor penguins: Implications for interpretation of long-term studies. In press at Ecography
• Trathan, P. N., P. García-Borboroglu, D. Boersma, C.-A. Bost, R. J. M. Crawford, G. T. Crossin, R. J. Cuthbert, P. Dann, L. S. Davis, S. De la Puente, U. Ellenberg, H.J. Lynch, T. Mattern, K. Pütz, P. J. Seddon, W. Trivelpiece, B. Wienecke. 2014. Assessing human impacts on marine systems, especially upon penguin species: how much do we care? In press at Conservation Biology
• Lynch, H.J., J. Thorson, O. Shelton. 2014. Dealing with under- and over-dispersed count data in life history, spatial, and community ecology. In press at Ecology
• Lynch, H.J., and M.A. LaRue. 2014. First global survey of Adélie penguin populations. The Auk 131(4):457-466
• Casanovas, P.V., H.J. Lynch, and W.F. Fagan. 2014. Using citizen science to estimate lichen diversity. Biological Conservation 171:1-8.
• LaRue, M.A., H.J. Lynch, P. Lyver, K. Barton, D.G. Ainley, A.M. Pollard, G. Ballard. 2014. Establishing a method to estimate Adélie penguin populations using remotely-sensed imagery. Polar Biology 37:507-517
• Zipkin. E.F., J.T. Thorson, K. See, H. J. Lynch, E.H.C. Grant, Y. Kanno, R.B. Chandler, B.H. Letcher, J.A. Royle. 2014. Modeling structured population dynamics using data from unmarked individuals. Ecology 95:22-29
• Lynch, H.J., M. Rhainds, J. Calabrese, S. Cantrell, C. Cosner, and W.F. Fagan. 2014. How climate extremes - not means - define a species' geographic range boundary via a demographic tipping point. Ecological Monographs 84:131-149
• Francesca Gherardi and Dianna K. Padilla. 2014. Climate-induced changes in human behavior and range expansion of freshwater species. Ethology, Ecology and Evolution 26:86-90
• Dianna K. Padilla and Brian Tsukimura. 2014. A new organismal systems biology: how animals walk the tightrope between stability and change. Integrative and Comparative Biology 54:218-222
• Daniel Grünbaum and Dianna K. Padilla. 2014. An integrated modeling approach to assessing linkages between environment, organism, and phenotypic plasticity. Integrative and Comparative Biology 54:323-335
• Sandra E. Shumway, J. Evan Ward, Eric Heupel, Bridget A. Holohan, Johann Heupel, Tamara Heupel and Dianna K. Padilla. 2014. Observations of feeding in the common Atlantic slippersnail Crepidula fornicata L., with special reference to the "mucus net". Journal of Shellfish Research 33:279-291
• Sarah M. Gray , Daniel E. Dykhuizen and Dianna K. Padilla. 2014. The effects of species properties and community context on establishment success. Oikos doi:10.1111/oik.01550
• Alexandra P. Hooks and Dianna K. Padilla. 2014. Prey responses to the presence of a native and nonnative predator. Journal of Experimental Marine Biology and Ecology 461:209-215
• Bart T. De Stasio, Michael B. Schrimpf and Brendan H. Cornwell. 2014. Phytoplankton Communities in Green Bay, Lake Michigan after Invasion by Dreissenid Mussels: Increased Dominance by Cyanobacteria. Diversity 6(4), 681-704; doi:10.3390/d6040681
• Yeh SD, True JR. 2014. The Genetic Architecture of Coordinately Evolving Male Wing Pigmentation and Courtship Behavior in Drosophila elegans and Drosophila gunungcola. G3 (Bethesda) pii:g3.114.013037. doi:10.1534/g3.114.013037
• Lucia Carbone, R. Alan Harris, Sante Gnerre, Krishna R. Veeramah, Belen Lorente-Galdos, John Huddleston, Thomas J. Meyer, Javier Herrero, Christian Roos, Bronwen Aken, Fabio Anaclerio, Nicoletta Archidiacono, Carl Baker, Daniel Barrell, Mark A. Batzer, Kathryn Beal, Antoine Blancher, Craig L. Bohrson, Markus Brameier, Michael S. Campbell, Oronzo Capozzi, Claudio Casola, Giorgia Chiatante, Andrew Cree, Annette Damert, et al. 2014. Gibbon genome and the fast karyotype evolution of small apes. Nature 513:195–201, doi:10.1038/nature13679
• Krishna R. Veeramah, Ryan N. Gutenkunst, August E. Woerner1, Joseph C. Watkins4 and Michael F. Hammer. 2014. Evidence for Increased Levels of Positive and Negative Selection on the X Chromosome versus Autosomes in Humans. Mol Biol Evol 31(9):2267-2282, doi:10.1093/molbev/msu166
• Vencl FV & Leschen RAB. 2014. Leschen RAB & Beutel RG (eds). Handbook of Zoology, Coleoptera Volume 3, Chapter 2.7.6. Criocerinae Lattreille 1807. Morphology and Systematics (Phytophaga) Walter de Gruyter, Berlin. pp.237-242
• Yohe, L.R., J. Flanders, H.M. Duc, L. Vu, T.B. Phung, Q.H. Nguyen, and S. Reddy. 2014. Unveiling the impact of human influence on species distributions in Vietnam: a case study using babblers (Aves: Timaliidae). Tropical Conservation Science 7(3):586-596

2014 Fall Publications from the Department of Ecology and Evolution

• Pearson, R.G., J.C. Stanton , K.T. Shoemaker, M.E. Aiello-Lammens, P.J. Ersts, N. Horning, D.A. Fordham, C.J. Raxworthy, H.Y. Ryu, J. McNees, and H.R. Akçakaya. 2014. Life history and spatial traits predict extinction risk due to climate change. Nature Climate Change 4:217-221.
• Shoemaker, K.T., R.C. Lacy, M.L. Verant, B.W. Brook, T.M. Livieri, P.S. Miller, D.A. Fordham, and H.R. Akçakaya. 2014. Effects of prey metapopulation structure on the viability of black-footed ferrets in plague-impacted landscapes: a metamodelling approach. Journal of Applied Ecology doi:10.1111/1365-2664.12223
• Keith, D.A. M. Mahony, H. Hines, J. Elith, T.J. Regan, J.B. Baumgartner, D. Hunter, G.W. Heard, N.J. Mitchell, K.M. Parris, T. Penman, B. Scheele, C.C. Simpson, R. Tingley, C.R. Tracy, M. West, and H.R. Akçakaya. 2014. Detecting extinction risk from climate change by IUCN Red List criteria. Conservation Biology doi:10.1111/cobi.12234
• J.U. Kreft, C.M. Plugge, V. Grimm, C. Prats, J.H.J. Leveau, T. Banitz, S.B. Baines, J. Clark, A. Ros, I. Klapper, C.J. Topping, A.J. Field, A. Schuler, E. Litchman, F.L. Hellweger. Mighty small: Observing and modeling individual microbes becomes big science. Proceedings of the National Academy of Sciences 110(45), 18027-18028
• Chen, N.S. Fisher, S.B. Baines. 2014. Influence of algal iron content on the assimilation and fate of iron and carbon in a marine copepod. Limnol. Oceanogr 59(1), 129-140
• Cahill, A.E., M.E. Aiello-Lammens, M.C. Fisher-Reid, X. Hua, C.J. Karanewsky, H.Y. Ryu, G.C. Sbeglia, F. Spagnolo, J.B. Waldron, and J.J. Wiens. 2014. Causes of warm-edge range limits: systematic review, proximate factors, and implications for climate change. Journal of Biogeography 41:429-442.
• Duncan, R.P., F. Husnik, J.T. Van Leuven, D.G. Gilbert, L.M. Dávalos, J.P. McCutcheon, A.C.C. Wilson. 2014. Dynamic recruitment of amino acid transporters to the insect/symbiont interface. Molecular Ecology XX, XX-XX.
• Dávalos, L.M., J.S. Holmes, N. Rodríguez, and D. Armenteras. 2014. Demand for beef is unrelated to pasture expansion in northwestern Amazonia. Biological Conservation 170, 64-73.
• Dumont, E. R., K. Samadevam, I. Grosse, O.M. Warsi, B. Baird, and L.M. Dávalos. 2014. Selection for Mechanical Advantage Underlies Multiple Cranial Optima in New World Leaf-Nosed Bats. Evolution 68(?), ????-????.
• Hayden, S., M. Bekaert, A. Goodbla, W.J. Murphy, L.M. Dávalos, and E.C. Teeling. 2014. A Cluster of Olfactory Receptor Genes Linked to Frugivory in Bats. Molecular Biology and Evolution 31(?), ????-????.
• Wray, G. A., H. E. Hoekstra, D. J. Futuyma, R. E. Lenski, T. F. C. Mackay, D. Schluter, and J. E. Strassmann. 2014. Does evolutionary theory need a rethink? Counterpoint: No, all is well. Nature 514:161-164.
• Arditi, R. Ginzburg, L.R. 2014. Improving communications between theoretical ecologists, mathematical ecologists, and ecological modelers. Theoretical Ecology 7:21-22.
• McCann, M.J. 2014. Population dynamics of the non-native freshwater gastropod, Cipangopaludina chinensis (Viviparidae): a capture-mark-recapture study. Hydrobiologia doi:10.​1007/​s10750-014-1819-3.
• Alexander Y. Karatayev, Lyubov E. Burlakova, M. Jake Vander Zanden, Richard C. Lathrop and Dianna K. Padilla. 2013. Change in a lake benthic community over a century: evidence for alternative community states. Hydrobiologia 700:287-300
• Dianna K. Padilla and Monique Savado. 2013. A systematic review of phenotypic plasticity in marine invertebrate and plant systems. Advances in Marine Biology 65:67-94.
• Vadim A. Karatayev, Alexander Y. Karatayev, Lyubov E. Burlakova, and Dianna K. Padilla. 2013. Lakewide dominance does not predict the potential for spread of dreissenids. Journal of Great Lakes Research 39:622-629.
• Kit Yu Karen Chan, Houshuo Jiang, Dianna K. Padilla. 2013. Swimming speed of larval snail does not correlate with size and ciliary beat frequency. PLOS ONE 8:e82764.
• Francesca Gherardi and Dianna K. Padilla. 2014. Climate-induced changes in human behavior and range expansion of freshwater species. Ethology, Ecology and Evolution 26:86-90.
• Martinez, C.A., J.S. Rest, A-R. Kim, M.Z. Ludwig, M. Kreitman, K.P. White, J. Reinitz. 2014. Ancestral resurrection of the Drosophila S2E enhancer reveals accessible evolutionary paths through compensatory change. Molecular Biology and Evolution doi:10.1093/molbev/msu042.
• Xi Z, J.S. Rest, C.C. Davis CC. 2013. Phylogenomics and coalescent analyses resolve extant seed plant relationships. PLoS ONE 8(11):e80870.
• Veeramah, K.R. and Hammer M.F. 2014. The Impact of Whole-Genome Sequencing on the Reconstruction of Human Population History. Nature Reviews Genetics Mar 15(3) pp.149-62
• Veeramah, K.R. and Novembre J. 2014. Demographic Events And Evolutionary Forces That Have Shaped European Genetic Diversity. in Human Variation: A Genetic Perspective on Diversity, Race, and Medicine. Cold Spring Harbor Press (due April 2014)