2015 Fall Publications from the Department of Ecology and Evolution

• Shelton, A.O., J.A. Hutchings, R.S. Waples, D.M. Keith, H.R. Akçakaya, N.K. Dulvy. 2015. Maternal age effects on Atlantic cod recruitment and implications for future population trajectories. ICES Journal of Marine Science 72:1769-1778.
• Bateman, B.L., A.M. Pidgeon, V.C. Radeloff, A.J. Allstadt, H.R. Akçakaya, W.E. Thogmartin, S.J. Vavrus and P.J. Heglund. 2015. The importance of range edges for an irruptive species during extreme weather events. Landscape Ecology 30:1095-1110.
• Lavington, E. Cogni, R., Kuczynski, C. , Koury, S. Behrman, E.L. Katherine, O’Brien, R. Schmidt, P.S. and W.F. Eanes. 2014. A small system – high resolution study of metabolic adaptation in the central metabolic pathway to temperate climates in Drosophila melanogaster. Mol. Biol. Evol. 31(8):2032–2041.
• Cogni, R., K. Kuczynski, E. Lavington, S. Koury, P. S. Schmidt and W.F. Eanes. 2015. Variation in Drosophila melanogaster central metabolic genes appears driven by natural selection both within and between populations. Proc. Roy. Soc. London. Ser. B. 282:20142688.
• Rodrigo Cogni, Caitlin Kuczynski, Spencer Koury, Erik Lavington, Emily L. Behrman, Katherine R. O’Brien, Paul S. Schmidt, and Walter F. Eanes. 2013. THE INTENSITY OF SELECTION ACTING ON THE COUCH POTATO GENE—SPATIAL–TEMPORAL VARIATION IN A DIAPAUSE CLINE. Evolution 68-2:538–548, doi:10.1111/evo.12291.
• Matthew E. Talbert, Brittany Barnett, Robert Hoff, Maria Amella, Kate Kuczynski, Erik Lavington, Spencer Koury, Evgeny Brud and Walter F. Eanes. 2015. Genetic perturbation of key central metabolic genes extends lifespan in Drosophila and affects response to dietary restriction. Proceedings of the Royal Society of London B. Biological Sciences 282:20151646.
• Borrelli, J., Allesina, S., Arditi, R., Chase, I., Damuth, J., Holt, R., Logofet, D., Rohr, R., Rossberg, A., Spencer, M., Tran, K., and Ginzburg, L.R. 2015. Selection on stability across ecological scales. Trends in Ecology and Evolution 30(7),417-425.
• Ginzburg L.R, Krebs C. 2015. Mammalian cycles: internally defined periods and interactiondriven amplitudes. PeerJ 3:e1180 DOI:10.7717/peerj.1180
• G Hilton, PJ Norman, N Nemat-Gorgani, A Goyos, JA Hollenbach, BM Henn, CR Gignoux, LA Guethlein, P Parham. 2015. Loss and Gain of Natural Killer Cell Receptor Function in an African Hunter-Gatherer Population. PLoS Genetics 11(8):e1005439.
• PH Sudmant, S Mallick, BJ Nelson, F Hormozdiari, N Krumm, J Huddleston, BP Coe, C Baker, S Nordenfelt, M Bamshad, LB Jorde, OL Posukh, H Sahakyan, WS Watkins, L Yepiskoposyan, MS Abdullah, CM Bravi, C Capelli, T Hervig, JTS Wee, C Tyler-Smith, GV Driem, IG Romero, A R Jha, S Karachanak-Yankova, D Toncheva, D Comas, BM Henn, T Kivisild, A Ruiz-Linares, A Sajantila, E Metspalu, J Parik, R Villems, EB Starikovskaya, G Ayodo, CM Beall, AD Rienzo, MF Hammer, R Khusainova, E Khusnutdinova, W Klitz, C Winkler, D Labuda, M Metspalu, SA Tishkoff, S Dryomov, R Sukernik, N Patterson, D Reich, EE Eichler. 2015. Global diversity, population stratification, and selection of human copy-number variation. Science 349(6253):aab3761.
• BM Henn, LR Botigué, CD Bustamante, AG Clark, S Gravel. 2015. Estimating the Mutation Load from Human Genomes. Nature Reviews Genetics 16(6):333-343.
• Alison Yee and Dianna K Padilla. 2015. Allometric scaling of the radula in the Atlantic slippersnail, Crepidula fornicata. Journal of Shellfish Research 34:903-907.
• Michael J McCann and Dianna K Padilla. 2015. Effects of a patchy food environment across life history stages. Journal of Experimental Marine Biology and Ecology 472:135-141.
• Sibony, P., M. J. Kupersmith, R. Honkanen, F. J. Rohlf, and A. Torab-Parhiz. 2014. Effects of lowering cerebrosphinal fluid pressure on the shape of the peripapillary retina in intracranial hypertension. Investgative ophthalmology & visual science 55:8223-8231.
• Rohlf, F.J. 2015. The tps series of software. Hystrix, the Italian Journal of Mammalogy 26:1-4.
• MARIA C. DÍAZ, ROBERT W. THACKER, NIAMH E. REDMOND, THIERRY PEREZ, ALLEN G. COLLINS. 2015. Vansoestia caribensis gen. nov., sp. nov.: first report of the family Ianthellidae (Verongida, Demospongiae) in the Caribbean. Zootaxa 3956(3):403-412.
• David M Baker, Christopher J Freeman, Nancy Knowlton, Robert W Thacker, Kiho Kim and Marilyn L Fogel. 2015. Productivity links morphology, symbiont specificity and bleaching in the evolution of Caribbean octocoral symbioses. The ISME Journal advance online publication doi:10.1038/ismej.2015.71.

2015 Spring Publications from the Department of Ecology and Evolution

• Akçakaya, H.R., S.H.M. Butchart, J.E.M. Watson, R.G. Pearson. 2014. Preventing species extinctions resulting from climate change. Nature Climate Change 4:1048-1049.
• Pacifi, M., W.B. Foden, P. Visconti, J.E.M. Watson, S. H.M. Butchart, K.M. Kovacs, B.R. Scheffers, D.G. Hole, T.G. Martin, H.R. Akçakaya, R.T. Corlett, B. Huntley, D. Bickford, J.A. Carr, A.A. Hoffmann, G.F. Midgley, P. P. Kelly, R.G.Pearson, S.E. Williams, S.G. Willis, B. Young, C. Rondinini. 2015. Assessing species vulnerability to climate change. Nature Climate Change (in press)
• Stanton , J.C., K.T. Shoemaker, R.G. Pearson, H.R. Akçakaya. 2015. Warning times for species extinctions due to climate change. Global Change Biology 21:1066–1077.
• Shoemaker, K.T. and H.R. Akçakaya. 2015. Inferring the nature of anthropogenic threats from long-term abundance records. Conservation Biology 29:238-249.
• Elizabeth G. Atkinson, Jeffrey Rogers, Michael C. Mahaney, Laura A. Cox, and James M. Cheverud. 2015. Cortical Folding of the Primate Brain: An Interdisciplinary Examination of the Genetic Architecture, Modularity, and Evolvability of a Significant Neurological Trait in Pedigreed Baboons (Genus Papio). Genetics Vol.200, 651–665.
• Borrelli, J.J. 2015. Selection against instability: stable subgraphs are most frequent in empirical food webs. Oikos (in press)
• Futuyma, D. J. 2015. Can modern evolutionary theory explain macroevolution? Pp. 29-85 in Macroevolution: Evidence, Measurement, Explanation, ed. E. Serrelli and N. Gontier, Springer.
• Futuyma, D. J. 2015. Basic evolutionary theory. In M. P. Muehlenbein (ed.), Basics in Human Evolution. Chapter 1, pp. 3-14. Academic Press (Elsevier), London and San Diego.
• Borrelli, J.J. and Ginzburg, L.R. 2014. Why there are so few trophic levels: selection against instability explains the pattern. Food Webs. doi:10.1016/j.fooweb.2014.11.002
• B. Weinstein, B.Tinoco, J. Parra, L Brown, and C. Graham. Taxonomic, Phylogenetic and Trait betadiverisity in South American Hummingbirds. The American Naturalist. 184, 2:211-224
• Gillett, David, J., Stephan B. Weisberg, Treda Grayson, Anna Hamilton, Virginia Hansen, Erik W. Leppo, Marguerite C. Pelletier, Angel Borja, Donald Cadien, Daniel Dauer, Robert Diaz, Margaret Dutch, Jeffery L. Hyland, Michael Kellog, Peter Larsen, Jeffrey Levinton, Roberto Llansó, Lawrence L. Lovel, Paul Montagna, Dean Pasko, Charles A. Phillips, Chet Rakocinski, J. Ananda Ranasinghe, Denise M. Sanger, Heliana Teixeira, Robert F. Van Dolah, Ronald G. Velarde, and Kathy I. Welch. 2015. Effect of ecological group classification schemes on performance of the AMBI benthic index in US coastal waters. Ecological Indicators 50:99-107.
• Levinton, J., S. Lord, Y. Higashide. 2015. Are crabs stressed for water on a hot sand flat? Water loss and field water state of two species of intertidal fiddler crabs. Journal of Experimental Marine Biology and Ecology 469:57-62.
• Sebastiano, D., J.S. Levinton, M. Doall, S. Kamath. 2015. Using a shellfish harvesting strategy to extract high nitrogen inputs in urban and suburban coastal bays: practical and economic implications. Journal of Shellfish Research 34: 573-583.
• Dianna K. Padilla, Michael McCann, Mica McCarty-Glenn, Alexandra Hooks, Sandra E. Shumway. 2014. Effect of food on time to metamorphic competence in the model system, Crepidula fornicata. Biological Bulletin. 227:242-251.
• Dianna K. Padilla, Thomas L. Daniel, Patsy S. Dickinson, Daniel Grünbaum, Cheryl Hayashi, Donal T. Manahan, James H. Marden, Billie J. Swalla and Brian Tsukimura. 2014. Addressing grand challenges in organismal biology - the need for synthesis. BioScience 64:1178-1187.
• Alexander Y. Karatayev, Lyubov E. Burlakova and Dianna K. Padilla. 2015. Zebra versus quagga mussels: a review of their spread, population dynamics, and ecosystem impacts. Hydrobiologia. 746:97-112.
• Alexander Y. Karatayev, Lyubov E. Burlakova, Sergey E. Mastitsky, and Dianna K. Padilla. 2015. Predicting the spread of aquatic invaders: insight from 200 years of invasion by zebra mussels. Ecological Applications. 25:430-440.
• Alexander Y. Karatayev, Demetrio Boltovskoy, Lyubov Burlakova and Dianna K. Padilla. 2015. Parallels and contrasts between Limnoperna fortunei and species of Dreissena. In: Limnoperna fortunei: the ecology, distribution and control of a swiftly spreading invasive fouling mussel, Demetrio Boltovskoy, Editor. Springer.
• Xi, Z., L. Liu, J.S. Rest, C.C. Davis. 2014. Coalescent versus concatenation methods and the placement of Amborella as sister to water lilies. Systematic Biology. doi:10.1093/sysbio/syu055.
• Martinez, C.A., J.S. Rest, A-R. Kim, M.Z. Ludwig, M. Kreitman, K.P. White, J. Reinitz. 2014. Ancestral resurrection of the Drosophila S2E enhancer reveals accessible evolutionary paths through compensatory change. Molecular Biology and Evolution. doi:10.1093/molbev/msu042.
• Heather Tallis, et al. 2014. A call for inclusive conservation. Nature. 515:27-28.
• David S. Salisbury, Ben G. Weinstein. Cultural Diversity in the Amazon Borderlands: Implications for Conservation and Development. Journal of Borderlands Studies. 29, 2.
• Ben G. Weinstein. 2014. MotionMeerkat: Integrating motion video detection and ecological monitoring. Methods in Ecology and Evolution.