2016 Fall Publications from the Department of Ecology and Evolution

• Ryu, H.Y., K.T. Shoemaker, É. Kneip, A. Pidgeon, P. Heglund, B. Bateman, W. Thogmartin, and H.R. Akçakaya. 2016. Developing population models with data from marked individuals. Biological Conservation 197:190–199.
• Collen, B., N.K. Dulvy, K. Gaston, U. Gärdenfors, D. Keith, A. Punt, H. Regan, M. Böhm, S. Hedges, M. Seddon, S. H. M. Butchart, M.Hoffmann, S. Bachman, and H. R. Akçakaya. 2016. Clarifying misconceptions of extinction risk assessment with the IUCN Red List. Biology Letters 12: 20150843.
• Fordham, D.A., H.R. Akçakaya, J. Alroy, F. Saltré, T.M. Wigley, B.W. Brook.2016. Predicting and mitigating future biodiversity loss using long-term ecological proxies. Nature Climate Change 6:909-916.
• Bateman, B.L., A.M. Pidgeon, V.C. Radeloff, C.H. Flather, J. VanDerWal, H.R. Akçakaya, W.E. Thogmartin, T.P. Albright, S.J. Vavrus, and P.J. Heglund. 2016. Potential breeding distributions of U.S. birds predicted with both short-term variability and long-term average climate data. Ecological Applications (in press) DOI:10.1002/eap.1416.
• Lynch, M., C. Foley, L. H. Thorne, and H. J. Lynch. 2016. Improving the use of biological data in Antarctic management. In press at Antarctic Science.
• Cimino, M.A., H. J. Lynch, V.S. Saba, and M.J. Oliver. 2016. Asymmetric response of Adélie penguins to Antarctic climate change. Scientific Reports 6:28785.
• Witharana, C., and H.J. Lynch. 2016. An object-based image analysis approach for detecting penguin guano from very high spatial resolution satellite images. Remote Sensing 8(5): 375.
• Lynch, H.J., R. White, R. Naveen, A.D. Black, M.S. Meixler, and W.F. Fagan. 2016. In stark contrast to widespread declines along the Scotia Arc, a survey of the South Sandwich Islands finds a robust seabird community. Polar Biology 39: 1615-1625.
• Witharana, C., M.A. LaRue, and H.J. Lynch. 2016. Benchmarking of data fusion algorithms in support of earth observation based Antarctic wildlife monitoring. ISPRS Journal of Photogrammetry and Remote Sensing 113: 124-143.
• Levy, H., G. Clucas, A. Rogers, A.D. Leaché, K. Ciborowski, M. Polito, H.J. Lynch, M. Dunn, and T. Hart. 2016. Population structure and phylogeography of the Gentoo Penguin (Pygoscelis papua) across the Scotia Arc. Ecology and Evolution 6(6): 1834-1853.
• Bender, N., K. Crosbie, and H.J. Lynch. 2016. Spatial patterns of tour ship traffic in the Antarctic Peninsula region: A twenty-year re-analysis. Antarctic Science 28(3): 194-203.
• Katheryn Van Alstyne and Dianna K Padilla. 2016. Chemical ecology of seagrasses. In: Chemical Ecology: The Ecological Impacts of Marine Natural Products, Eds: Puglisi MP, Becerro MA, Paul VJ, CRC Press, In press.
• Alexander Y. Karatayev, Lyubov E. Burlakova and Dianna K. Padilla. 2016. Can introduced species replace lost biodiversity? A test with freshwater molluscs. Hydrobiologia DOI:10.1007/s10750-017-3135-1
• Slattery M, Gochfeld DJ, Diaz MC, Thacker RW, Lesser MP. 2016. Variability in chemical defense across a shallow to mesophotic depth gradient in the Caribbean sponge Plakortis angulospiculatus. Coral Reefs 35:11-22. doi:10.1007/s00338-015-1324-9.
• Thomas T, Moitinho-Silva L, Lurgi M, Bjork J, Easson C, Astudillo-Garcia C, Olson JB, Erwin PM, Lopez-Legentil S, Luter H, Chaves-Fonnegra A, Costa R, Schupp RP, Steindler L, Erpenbeck D, Gilbert J, Knight R, Ackermann G, Lopez JV, Taylor MW, Thacker RW, Montoya JM, Hentschel U, Webster NS. 2016. Diversity, structure, and convergent evolution of the global sponge microbiome. Nature Communications 7:11870. doi:10.1038/ncomms11870.
• Vencl FV, Ottens K, Dixon MM, Chandler S, Bernal XE, Estrada C, Page RA (2016) Pyrazine emission by a tropical firefly: an example of chemical aposematism? Biotropica 48(5): 645-655 DOI: 10.1111/btp.12336 (cover illustration; Editor's Choice).

2016 Spring Publications from the Department of Ecology and Evolution

• Brooks, T.M., H.R. Akçakaya, N.D. Burgess, S.H.M. Butchart, C. Hilton-Taylor, M. Hoffmann, D. Juffe-Bignoli, N. Kingston, B. MacSharry, M. Parr, L. Perianin, E.C. Regan, A.S.L. Rodrigues, C. Rondinini, Y. Shennan-Farpon, and B.E. Young. 2016. Analysing biodiversity and conservation knowledge products to support regional environmental assessments. Nature Scientific Data 3:160007.
• Prowse, T., C. Bradshaw, S. Delean, P. Cassey, R. Lacy, K. Wells, M. Aiello-Lammens, H.R. Akçakaya, B. Brook. 2015. An efficient protocol for the global sensitivity analysis of stochastic ecological models. Ecosphere (in press)
• Joppa, L. N., S. H. M. Butchart, M. Hoffmann, S. Bachman, H. R. Akçakaya, J. Moat, M. Böhm, R. A. Holland, A. Newton, B. Polidoro, and A. Hughes. 2015. Impact of alternative metrics on estimates of extent of occurrence for extinction risk assessment. Conservation Biology (in press) DOI: 10.1111/cobi.12591
• Keith, D., H.R. Akçakaya, S.H.M. Butchart, B. Collen, N.K. Dulvy, E.E. Holmes, J.A. Hutchings, D. Keinath, M.K. Schwartz, A.O. Shelton, R.S. Waples. 2015. Temporal correlations in population trends: conservation implications from time-series analysis of diverse animal taxa. Biological Conservation 192:247–257.
• Chadid, M.A., L.M. Dávalos, J. Molina, D. Armenteras. 2015. A Bayesian Spatial Model Highlights Distinct Dynamics in Deforestation from Coca and Pastures in an Andean Biodiversity Hotspot. Forests 2015(6): 3828-3846. DOI: 10.3390/f6113828.
• Yohe, L.R., P.M. Velazco, D. Rojas, B.E. Gerstner, N.B. Simmons, L.M. Dávalos. 2015. Bayesian hierarchical models suggest oldest known plant-visiting bat was omnivorous. Biology Letters 11(11):1-5. DOI: 10.1098/rsbl.2015.0501.
• Rojas, D.*, O.M. Warsi, L.M. Dávalos*. 2016. Bats (Chiroptera: Noctilionoidea) challenge recent origin of extant neotropical diversity. Systematic Biology. *Corresponding authors.
• Laurel R. Yohe, Paúl M. Velazco, Danny Rojas, Beth E. Gerstner, Nancy B. Simmons, Liliana M. Dávalos. 2015. Bayesian hierarchical models suggest oldest known plant-visiting bat was omnivorous. Biology Letters, 11/2015.
• Dykhuizen, D. E. 2015. Review of "The 'andom Genetic Drift' Fallacy" by William B. Provine. Quart. Rev. Biol. 90:230-231.
• Spognolo, F., C. Rinaldi, D. R. Sajorda, D. E. Dykhuizen. 2016. The evolution of resistance to continuously increasing streptomycin concentrations in population of E. coli. Antimicrob. Agents Chemother. 60:1336-1342
• Dykhuizen, D. 2016. Thoughts toward a theory of natural selection: The importance of microbial experimental evolution. In (H. Ochman, ed) Microbial Evolution, Cold Spring Harbor Perspectives in Biology, Cold Spring Harbor Laboratories Press, Cold Spring Harbor, NY. pp81-95.
• LR Ginzburg and CJ Krebs. 2015. Mammalian cycles: internally defined periods and interaction-driven amplitudes. PeerJ 3:e1180; DOI 10.7717/peerj.1180
• Jonathan J Borrelli, Stefano Allesina, Priyanga Amarasekare, Roger Arditi, Ivan Chase, John Damuth, Robert D Holt, Dmitrii O Logofet, Mark Novak, Rudolf P Rohr, Axel G Rossberg, Matthew Spencer, J Khai Tran, Lev R Ginzburg. 2015. Selection on stability across ecological scales. Trends in ecology & evolution 30 (7), 417-425
• BM Henn, LR Botigué, S Peishl, I Dupanloup, M Lipatov, BK Maples, AR Martin, S Musharoff, H Cann, M Snyder, L Excoffier, JM Kidd, CD Bustamante. 2016. Distance from Sub-Saharan Africa Predicts Mutational Load in Diverse Human Genomes. PNAS 113(4): E440-E449.
• Cahill, A.E., Levinton, J.S. 2016. Genetic differentiation and reduced genetic diversity at the northern range edge of two species with different dispersal modes. Molecular Ecology Volume 25 (2):515–526.
• Levinton, J.S. 2016. Bilateral Linkage of Monomorphic and Dimorphic Limb Sizes of Fiddler Crabs. Biological Journal of the Linnaean Society. In press.
• Nicole A. Bender, Kim Crosbie, Heather J. Lynch. 2016. Patterns of tourism in the Antarctic Peninsula region: a 20-year analysis. Antarctic Science pp.1-10 doi:10.1017/S0954102016000031.
• Rest, J.S, O. Wilkins, W. Yuan, M. Purugganan, J. Gurevitch. 2016. Meta-analysis and meta-regression of transcriptomic response to water stress in Arabidopsis. The Plant Journal 85: 548-560.
• O’Hara, N.B., J.S. Rest, S.J. Franks. 2015. Increased susceptibility to fungal disease accompanies adaptation to drought in Brassica rapa. Evolution 70(1): 241-248.